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Pumpkin Zucchini Breakfast Vegetarian Muffins
4.4 from 40 votes

Pumpkin Zucchini Muffins

Jump to RecipeVideoPrintRate
By: Joanna Cismaru •Last Updated: 10/13/25 21 Comments

This post may contain affiliate links. Please read my disclosure policy.

pin for pumpkin zucchini muffins.

These Pumpkin Zucchini Muffins are part cozy fall treat, part sneaky veggie win. Moist, fluffy and topped with crunchy pepitas, they’re the grab-and-go snack you’ll keep reaching for all season.

Table of Contents

Toggle
  • The Fall Muffins That Disappear Fast
  • Why You’ll Love These Pumpkin Zucchini Muffins
  • Ingredients and Tips
  • How To Make Pumpkin Zucchini Muffins
  • Substitutions
  • Frequently Asked Questions
  • Try These Muffins Next
  • Recipe: Pumpkin Zucchini Muffins
Pile of pumpkin zucchini muffins with golden tops and crunchy pepitas stacked on a cooling rack.
Joanna Cismaru 2022 blogger Jo Cooks

The Fall Muffins That Disappear Fast

There’s just something about fall baking that makes me ridiculously happy. The kitchen smells amazing, the oven keeps the house warm, and suddenly muffins feel like a completely acceptable breakfast, lunch, or snack. These Pumpkin Zucchini Muffins are one of my absolute favorites to bake when the leaves start turning. They’re soft, and golden with a sneaky bit of zucchini that keeps them tender and moist.

These muffins may sound complicated – but believe me they ain’t! The most time intensive part is prepping the zucchini but even then all you need to do is grate it up and squeeze the water out, or free therapy as I like to call it. Other than that, these muffins can be on your table in 45 minutes flat, pretty good for a baked treat I must say.

Detailed view of freshly baked pumpkin zucchini muffins with a light sugar crust and toasted pepitas.

Why You’ll Love These Pumpkin Zucchini Muffins

  • Moist and fluffy. The combo of pumpkin and zucchini keeps these muffins soft and tender.
  • Sneaky veggie bonus. Nobody will guess there’s zucchini hiding in there, but you’ll feel good knowing it’s in the mix.
  • Baker’s dream recipe. Comes together in minutes, makes the house smell amazing, and is practically foolproof.
  • Perfect for any time of day. Breakfast on the go, cozy afternoon snack, or dessert with a cup of coffee.
  • Freezer-friendly and meal prep ready. Bake once, stash a batch, and enjoy homemade muffins whenever the craving hits.
Overhead view of all the ingredients for pumpkin zucchini muffins including pumpkin puree, shredded zucchini, flour, brown sugar, egg, vanilla, baking powder, melted butter, and pepitas.

Ingredients and Tips

  • Let the batter rest. I know it’s hard to wait when the kitchen smells so good, but give your batter 15 minutes to rest before baking. This little pause lets the baking powder activate and the gluten relax, which means taller, fluffier muffins with a perfect rise. Totally worth the wait.
  • Fill the cups to the top. No half measures here. Scoop that batter right up to the rim of each muffin cup. That generous fill is the secret to those bakery-style domes. Pro tip: an ice cream scoop makes portioning super easy (and keeps things neat).
  • Start with high heat. Here’s a bakery trick: bake the muffins at 425°F for the first 7 minutes, then reduce to 350°F for the remaining time. That initial blast of heat helps them rise quickly, giving you those beautiful, sky-high tops.
  • Squeeze the zucchini. This one’s non-negotiable. Too much moisture will make your muffins heavy and dense. Grate the zucchini, then squeeze it really well, a kitchen towel or paper towel works perfectly.
  • Don’t overmix. Stir just until the dry ingredients disappear. A few lumps in the batter are completely fine and will actually give you a better texture.
  • Add-ins are welcome. Chopped nuts, chocolate chips, or dried cranberries all work beautifully. Just don’t overload the batter or it might affect the rise.

How To Make Pumpkin Zucchini Muffins

Prep the oven and pan

Preheat your oven to 425°F and get your muffin pan ready. You can either spray it with nonstick cooking spray or line it with paper liners. A 12-cup pan will give you standard muffins, but if you’re feeling bold, go for 6 jumbo ones.

Mix the dry ingredients

process shots showing how to make pumpkin zucchini muffins.

In a large bowl, whisk together 2 ½ cups of flour, ¾ cup of packed brown sugar, 1 tablespoon baking powder, and 1 teaspoon salt. Set that aside.

Mix the wet ingredients

process shots showing how to make pumpkin zucchini muffins.

In a separate bowl, whisk together 1 cup pumpkin puree, 1 grated and well-drained zucchini, 1 egg, ½ cup melted butter, ⅔ cup milk, and 1 teaspoon vanilla. Make sure that zucchini is really squeezed.

Make the batter

process shots showing how to make pumpkin zucchini muffins.

Pour the wet mixture into the dry ingredients and gently fold them together with a spatula. The goal is to mix until no streaks of flour remain. The batter should be slightly lumpy. Overmixing will make your muffins tough.

Fill the muffin cups

process shots showing how to make pumpkin zucchini muffins.

Use an ice cream scoop (trust me, it makes life easier) to fill each muffin cup all the way to the top. Don’t hold back here, that generous fill is what gives you those high, bakery-style muffin tops. Sprinkle each one with pepitas and a little turbinado sugar for extra crunch and sparkle.

Bake for the perfect rise

process shots showing how to make pumpkin zucchini muffins.

Bake the muffins at 425°F for the first 7 minutes. This blast of high heat helps them rise tall and proud. Then reduce the temperature to 350°F and bake for another 16 to 20 minutes until they’re golden and a toothpick inserted into the center comes out clean.

Let the muffins cool in the pan for 5 minutes, then transfer them to a wire rack to finish cooling. Or, if you’re like me, eat one warm because fresh-out-of-the-oven muffins are one of life’s greatest joys.

Dozen pumpkin zucchini muffins on a cooling rack showing their golden color and crisp, crunchy tops.

Substitutions

  • Pumpkin puree: You can use homemade pumpkin puree if you’ve got it on hand, or even mashed sweet potato or butternut squash.
  • Zucchini: Swap it for grated carrot if that’s what’s in the fridge. It adds the same moisture and sneaky veggie boost.
  • Butter: Melted coconut oil or a neutral oil like vegetable or canola works just as well here. The flavor will be a bit lighter, but the texture stays tender and soft.
  • Milk: Any dairy or non-dairy milk will work. Almond, oat, soy, you name it.
  • Flour: Feel free to replace up to half of the all-purpose flour with whole wheat for a nuttier flavor and more fiber.
  • Pepitas: Chopped walnuts or pecans add great crunch too. Or skip the topping entirely if you’re keeping it simple.
  • Sugar: You can use coconut sugar or regular white sugar in place of brown. The muffins will be slightly less rich in flavor but still sweet and tasty.
  • Jo’s Tip: As long as you keep the wet-to-dry ratio roughly the same, this recipe is super forgiving.
“Close up of a golden pumpkin zucchini muffin topped with pepitas served on a white plate with more muffins in the background.

Frequently Asked Questions

Can I make these muffins ahead of time?

Absolutely. These muffins keep really well for a few days, so they’re perfect for meal prep. Bake them, let them cool completely, then store them in an airtight container at room temperature for up to 3 days or in the fridge for up to 5.

Can I freeze them?

Yes! Once cooled, pop them into a freezer-safe bag or container and freeze for up to 3 months. When you’re ready to eat, just thaw one on the counter or warm it up in the microwave for 20 to 30 seconds.

Can I bake these in an air fryer?

You sure can. Line your air fryer basket with parchment liners and fill them about three-quarters full. Air fry at 325°F for about 15 to 18 minutes until a toothpick comes out clean. The muffins won’t rise quite as high as they do in the oven, but they’ll still be soft, fluffy, and delicious.

How do I keep my muffins from sinking?

Two big reasons muffins sink: overmixing the batter and opening the oven door too early. Stir gently and only until the flour disappears. And resist the urge to peek while they’re baking, that quick drop in temperature can mess with the rise.

Why are my muffins dry?

Dry muffins usually mean too much flour or overbaking. Always spoon and level your flour instead of scooping directly from the bag, and start checking for doneness a couple of minutes early. Remember, they’ll keep cooking a bit as they cool.

Can I make them gluten-free?

Yes, just use a good 1:1 gluten-free flour blend. The texture might be slightly different, but they’ll still be moist and tasty.

Top view of pumpkin zucchini muffins on a wire rack with one muffin broken open to show the moist fluffy texture inside.

Try These Muffins Next

  • The Perfect Banana Muffins
  • Apple Coffee Cake Muffins
  • Peanut Butter and Chocolate Chip Muffins
  • Double Chocolate Muffins
  • Easy Egg Muffins
  • Blueberry Muffins
  • Banana Nut Muffins
  • Pumpkin Chocolate Chip Muffins

Before You Begin! If you make this, please leave a review and rating letting us know how you liked this recipe! This helps our business thrive & continue providing free recipes.

Pile of pumpkin zucchini muffins with golden tops and crunchy pepitas stacked on a cooling rack.
4.35 from 40 votes

Pumpkin Zucchini Muffins

Prep 15 minutes minutes
Cook 30 minutes minutes
Total 45 minutes minutes
12
Rate Recipe Print Recipe
These Pumpkin Zucchini Muffins are soft, spiced, and full of cozy fall flavor. They make your kitchen smell incredible and taste like a bakery treat. Each bite is tender, moist, and just sweet enough, with a sneaky boost of veggies that makes them feel a little less indulgent while still tasting like cake. Perfect for breakfast, brunch, or a quick afternoon snack with coffee.

Video

Ingredients

  • 2 ½ cups all-purpose flour
  • ¾ cup brown sugar (packed)
  • 1 tablespoon baking powder
  • 1 teaspoon salt
  • 1 cup canned pumpkin
  • 1 medium zucchini (grated and drained)
  • 1 large egg
  • ½ cup butter (unsalted and melted)
  • ⅔ cup milk
  • 1 teaspoon vanilla extract
  • ¼ cup pepitas (toasted for sprinkling over the top of muffins)
  • 1 tablespoon turbinado sugar (for sprinkling over the top of muffins)

Before You Begin! If you make this, please leave a review and rating letting us know how you liked this recipe! This helps our business thrive & continue providing free recipes.

Instructions 

  • Preheat the oven to 425℉. Spray a 6 or 12 muffing baking pan with cooking spray, or line it with muffin liners.
  • In a large bowl combine the flour, brown sugar, baking powder and salt. Set aside.
  • In another bowl whisk the pumpkin, zucchini with the egg, melted butter, milk and vanilla extract.
  • Add the pumpkin zucchini mixture to the flour mixture and using a spatula mix everything until the flour is moistened, don't over mix, and keep in mind the batter will be a bit lumpy.
  • Spoon the muffin batter (I used an ice cream scoop) into the prepared muffin pan. You will completely fill the muffin cups, this way you will get nice muffins with perfect domes. The batter should be enough for 12 small muffins or 6 jumbo muffins. Top each muffin with a few pepitas, then sprinkle with some turbinado sugar or brown sugar.
  • Transfer the muffin pan to the oven on the middle rack and bake for 7 minutes at 425ºF, then turn the temperature down to 350ºF and bake for another 16-20 minutes or until muffins are done. To test for doneness, insert a toothpick in the center of a muffin and if it comes out clean the muffins are baked. Let the muffins cool in the pan for 5 minutes, then transfer them to a wire rack to finish cooling.

Notes

  1. Let the batter rest. Give the batter 15 minutes before baking. This allows the baking powder to activate and the gluten to relax, which creates a higher rise and a fluffier texture.
  2. Fill those muffin cups. Fill them right to the top for those tall, bakery-style domes. An ice cream scoop makes portioning easier and more consistent.
  3. Start hot, finish low. Bake at 425°F for the first 7 minutes to help them rise, then reduce the temperature to 350°F to finish baking through.
  4. Squeeze the zucchini. Excess moisture will make the muffins dense. Wrap the grated zucchini in a kitchen towel and squeeze out as much water as possible.
  5. Add a topping. Pepitas and turbinado sugar give these muffins a beautiful finish with a little crunch.
  6. Freezer friendly. These muffins freeze well for up to 3 months. Reheat in the microwave for 20 to 30 seconds when ready to eat.

Nutrition Information

Serving: 1muffinCalories: 250kcal (13%)Carbohydrates: 38g (13%)Protein: 5g (10%)Fat: 9g (14%)Saturated Fat: 5g (31%)Polyunsaturated Fat: 1gMonounsaturated Fat: 2gTrans Fat: 0.3gCholesterol: 37mg (12%)Sodium: 215mg (9%)Potassium: 270mg (8%)Fiber: 2g (8%)Sugar: 16g (18%)Vitamin A: 3483IU (70%)Vitamin C: 4mg (5%)Calcium: 88mg (9%)Iron: 2mg (11%)
© Author Joanna Cismaru

Notice: Nutrition is auto-calculated for your convenience. Where relevant, we recommend using your own nutrition calculations.

Pile of pumpkin zucchini muffins with golden tops and crunchy pepitas stacked on a cooling rack.

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Joanna Cismaru

Joanna Cismaru

I'm Joanna Cismaru, home cook, recipe developer, and the person behind JoCooks since 2011. I test every recipe in my own kitchen, multiple times, until it's actually worth making. My goal is simple: recipes that work, written the way a real person cooks.

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I’m Joanna Cismaru, home cook, recipe developer, and the person behind JoCooks since 2011. I test every recipe in my own kitchen, multiple times, until it’s actually worth making. My goal is simple: recipes that work, written the way a real person cooks.

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